The purpose of this page is just to serve as todo or scratch pad for the development project and to list and share some ideas.

After making changes to the code and/or documentation, this page should remain on the wiki as a reminder of what was done and how it was done. However, there is no guarantee that this page is updated in the end to reflect the final state of the project

So chances are that this page is considerably outdated and irrelevant. The notes here might not reflect the current state of the code, and you should not use this as serious documentation.

cleanup the functions in the private folders

functions that according to mydepfun are not called by any other function:

nonused = 

    '/home/electromag/sashae/matlab/fieldtrip/private/LoadSpikes.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/ama2vol.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/appendevent.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/atlas_init.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/atlas_mask.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/avw_img_read.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/bandstopfilter.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/binomialprob.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/browse_movieplotER.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/browse_multiplotER.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/browse_topoplotER.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/browse_topoplotVAR.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/bti2grad.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/closedf.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/continuous_ns.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/ctf2grad.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/dataset2files.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/define_biff.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/denoise_artifact.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/dftfilter.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/dimassign.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/expand_orthogonal.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/fif2grad.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/filetype_check_extension.m'      
    '/home/electromag/sashae/matlab/fieldtrip/private/filetype_check_header.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/filetype_check_uri.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/find_inside_vol.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/fourier2crsspctrm.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/freq2cumtapcnt.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/fwer.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/globalrescale.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/highpassfilter.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/inf_medium_leadfield.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/inifile.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/inputlabel2outputlabel.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/interp_ungridded.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/loadama.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/lowpassfilter.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/ltrisect.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/magnetic_dipole.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/matlabversion.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/meg_forward.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/meg_ini.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nanstandardise.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nanstd.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nansum.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nanvar.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/neuralynx_numrecords.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nex_cont.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nex_info.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nex_int.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nex_marker.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nex_ts.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nex_wf.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/nimh2grad.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/notchfilter.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/openbdf.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/openedf.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/plinproj.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/prepare_brain_surface.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/raw2data.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_besa_pdg.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_bin.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_ds.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_nev.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_nst.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_ntt.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_tsh.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_tsl.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/read_neuralynx_ttl.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/readbdf.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/readmarkerfile.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/rigidbody.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/sensortype.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/shiftpredict.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/spearman_binned.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/spearman_diff.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/specest_hilbert.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/specest_mtmwelch.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/specest_mvar.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/specest_tfr.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/sphfit.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/spikesort.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/splint_gh.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/standardise.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/timestamp_plexon.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/transfer_elec.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/transform2grid.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/translate_channel_list.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/volplot.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/wizard_base.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/write_brainvision_eeg.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/write_ctf_shm.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/write_neuralynx_ncs.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/write_neuralynx_nse.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/write_plexon_nex.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/yokogawa2grad.m'
    '/home/electromag/sashae/matlab/fieldtrip/private/yokogawa2vol.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/avw_img_write.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/buffer.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/mxDeserialize.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/mxSerialize.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/neuralynx_numrecords.m'   
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_asa_dip.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_asa_msr.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_besa_mul.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_besa_pdg.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_besa_src.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_besa_tfc.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_bham.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_biff.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_brainvision_marker.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_brainvision_vmrk.m'  
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_bti_ascii.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_bv_srf.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_ctf_coef.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_ctf_dat.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_ctf_sens.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_curry.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_elec.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_fcdc_trl.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_labview_dtlg.m'      
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_lay.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_mat.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_neuralynx_tsh.m'     
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_neuralynx_tsl.m'     
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_off.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/read_stl.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/rmsubfield.m'
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/write_neuralynx_nts.m'    
    '/home/electromag/sashae/matlab/fieldtrip/fileio/private/write_stl.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/avgref.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/find_inside_vol.m'       
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/fixdipole.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/meg_leadfield1.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/progress.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/rmsubfield.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/setsubfield.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/sphfit.m'
    '/home/electromag/sashae/matlab/fieldtrip/forward/private/triangle4pt.m'
    '/home/electromag/sashae/matlab/fieldtrip/inverse/private/rmsubfield.m'
    '/home/electromag/sashae/matlab/fieldtrip/inverse/private/setsubfield.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/black.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/blue.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/brain.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/cortex.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/green.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/icosahedron42.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/red.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/select3dtool.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/skin.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/skull.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/white.m'
    '/home/electromag/sashae/matlab/fieldtrip/plotting/private/yellow.m'
    '/home/electromag/sashae/matlab/fieldtrip/public/private/fixdipole.m'
    '/home/electromag/sashae/matlab/fieldtrip/public/private/offset2time.m'
    '/home/electromag/sashae/matlab/fieldtrip/public/private/pos2transform.m'
    '/home/electromag/sashae/matlab/fieldtrip/statfun/private/nansum.m'
    '/home/electromag/sashae/matlab/fieldtrip/statfun/private/nanvar.m'