The purpose of this page is just to serve as todo or scratch pad for the development project and to list and share some ideas.
After making changes to the code and/or documentation, this page should remain on the website as a reminder of what was done and how it was done. However, there is no guarantee that this page is updated in the end to reflect the final state of the project
So chances are that this page is considerably outdated and irrelevant. The notes here might not reflect the current state of the code, and you should not use this as serious documentation.
Ensure consistency of the documentation
Tutorials
Preprocessing - trigger based trial selection
Done, all the code works (9 dec 2008)
Preprocessing - manual artifact detection based on visual inspection
The code gives no errors but this tutorial has to be rewritten. The scaling options for rejectvisial changed. Now the eog / ecg channels can be scaled separately so you can reject trials based on the artifact channels. Because of these changes the data is not scaled properly and old cfg options are used. There is also another fixme that has to be fixed. (9 dec 2008)
Preprocessing - automatic artifact identification
Event-related fields and the planar gradient
Parametric and non-parametric statistics on event-related fields
Fourier analysis of oscillatory power and coherence
Time-frequency Analysis Using Multitapers and Wavelets
Analysis of corticomuscular coherence
Applying beamforming techniques in the frequency domain
In volumesegment you get 2 warnings:
- FINITE is obsolete and will be removed in future versions. Use ISFINITE instead.
- Can’t get default analyze orientation - assuming flipped
The call to sourceplot(cfg,sourceDiffIntNorm) gives a plot with MRI but without sources. (15 dec 2008)
The structure sourceDiffIntN has no inside field, so it cannot be removed. Making the plot with method ‘surface’ afterwards gives an error ‘undefind function or variable val’.
In the source statistics part there is cfg.grid=grid but grid is never defined. So there is an error there. Because of this error you cannot make sourceSTAT and therefore it is not possible to do the rest of the tutorial.
In this tutorial there are many lines with load …. (for any reason) but these files are not in the tutorial data that people download. Maybe they should be there because if a certain part doesn’t work anymore they can load the results and work further. We could also include lines to save the results like in the first tutorial.
Because I didn’t do source analysis myself until now I don’t now the best way to solve these problems.(16 dec 2008)