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getting_started:bioimage [2018/07/11 13:22]
robert replaced BIS by BioImage Suite
getting_started:bioimage [2018/07/11 13:23] (current)
robert [Getting started with BioImage Suite]
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 ====== Getting started with BioImage Suite ====== ====== Getting started with BioImage Suite ======
  
-Viewing and localizing intracranial EEG (iEEG) electrodes from volumetric brain images (CT and/or MR images) can be accomplished using **[[reference:​ft_electrodeplacement]]**,​ as demonstrated in the [[tutorial:​human_ecog|Analysis of human ECoG and sEEG recordings]] tutorial. ​+Viewing and localizing intracranial EEG (iEEG) electrodes from volumetric brain images (CT and/or MR images) can be accomplished using **[[reference:​ft_electrodeplacement]]**,​ as demonstrated in the [[tutorial:​human_ecog|Analysis of human ECoG and sEEG recordings]] tutorial. Alternatively,​ users may choose to localize electrodes using [[http://​bioimagesuite.yale.edu|BioImage Suite]] and subsequently view them in MATLAB using FieldTrip. Finally, users may also choose to localize electrodes using **[[reference:​ft_electrodeplacement]]** and subsequently view them in BioImage Suite
  
-Alternatively,​ users may choose to localize electrodes using [[http://​bioimagesuite.yale.edu|BioImage Suite]] and subsequently view them in MATLAB using FieldTrip; or users may choose to localize electrodes using **[[reference:​ft_electrodeplacement]]** and subsequently view them in BioImage Suite. ​This page covers (1) how electrodes that have been localized in BioImage Suite (*.mgrid files) can be loaded into MATLAB as a FieldTrip-compatible elec structure; and (2) how electrodes that have been localized in FieldTrip can be saved as BioImage Suite compatible *.mgrid files.+This page covers (1) how electrodes that have been localized in BioImage Suite (*.mgrid files) can be loaded into MATLAB as a FieldTrip-compatible elec structure; and (2) how electrodes that have been localized in FieldTrip can be saved as BioImage Suite compatible *.mgrid files.
  
 ===== BioImage Suite (*.mgrid files) → FieldTrip (elec structures) ===== ===== BioImage Suite (*.mgrid files) → FieldTrip (elec structures) =====