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ft_preproc_slidingrange.m
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ft_preproc_slidingrange.m
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function y = ft_preproc_slidingrange(dat, width, normalize, varargin)
% FT_PREPROC_SLIDINGRANGE computes the range of the data in a sliding time
% window of the width specified.
%
% Use as
% [dat] = ft_preproc_slidingrange(dat, width, normalize)
% where
% dat data matrix (Nchans x Ntime)
% width width of the smoothing kernel, this should be an odd number since the window needs to be centered on an individual sample
% normalize boolean, whether to normalize the range of the data with the square root of the window size (default = false)
%
% If the data contains NaNs, these are ignored for the computation, but retained in
% the output.
%
% See also PREPROC
% Copyright (C) 2012, Donders Centre for Cognitive Neuroimaging, Nijmegen, NL
%
% This file is part of FieldTrip, see http://www.fieldtriptoolbox.org
% for the documentation and details.
%
% FieldTrip is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% FieldTrip is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with FieldTrip. If not, see <http://www.gnu.org/licenses/>.
%
% $Id$
if nargin>3
% for backward compatibility, this function was first implemented as ft_preproc_slidingrange(dat, width, ...)
% with 'normalize' as an optional key-value pair, but all other PREPROC functions take fixed input arguments
normalize = varargin{1};
end
if nargin<3 || isempty(normalize)
normalize = false;
end
% preprocessing fails on channels that contain NaN
if any(isnan(dat(:)))
ft_warning('FieldTrip:dataContainsNaN', 'data contains NaN values');
end
if mod(width+1, 2)
ft_error('width should be an odd number');
end
% compute half width
h = (width-1)/2;
n = size(dat,2);
minval = zeros(size(dat));
maxval = zeros(size(dat));
for i=1:n
begsample = i-h;
endsample = i+h;
if begsample<1
begsample = 1;
end
if endsample>n
endsample=n;
end
minval(:,i) = min(dat(:,begsample:endsample),[],2);
maxval(:,i) = max(dat(:,begsample:endsample),[],2);
end
y = maxval - minval;
if istrue(normalize)
y = y ./ sqrt(width);
end